Center for Reproducible Biomedical Modeling

The 26th online Annual Workshop on Computational Cell Biology will take place February 24-28, 2025 at the Center for Cell Analysis and Modeling at UConn Health. The course (the tentative schedule https://compcellbio.org/assets/2025_CCB_online_schedule.pdf) will combine lessons on modeling techniques (e.g. ODE, PDE, stochastic, spatial stochastic, agent- and rule-based modeling) using VCell (http://vcell.org/), COPASI (http://copasi.org/) and SpringSalad (https://vcell.org/ssalad), and interactive hands-on sessions using software to design your models and perform simulations.

There is no registration fee, but please register (https://forms.gle/nPgXDa3A6kXdPTrh7) by January 31st. To be included in the project track, please send 1-2 page proposal explaining how you feel VCell, COPASI and/or SpringSalad will help your research project to Dr. Michael Blinov [email protected]. This info will allow us to determine if the current implementations of our tools apply to your project.
More info is in the attached flyer - please spread the word!

Modeling topics include but not limited to:
• Spatial modeling
• Using ImageJ in spatial modeling
• Parameter Estimation
• Rule-based modeling with BioNetGen & NFsim
• Langevin simulations with SpringSaLaD
• Stochasticity & Discontinuity – Scripting
• Common modeling pitfalls
• Spatial stochastic modeling with SmolDyn

Research talks are given by:
• Aniruddha Chattaraj, Harvard University
• Margaret Johnson, John Hopkins University
• Leslie Loew, University of Connecticut School of Medicine
• Pedro Mendes, University of Connecticut School of Medicine

A separate in-person workshop is being planned for summer 2025 in Farmington, CT. More details to follow.

The Center for Reproducible Biomedical Modeling invites you to join the second speaker of our fall 2024 Building Models and Publishing Models Seminar Series.

Join us on Friday, November 15th as we hear Curvenote CEO from Dr. Rowan Cockett, PhD as he speak on the future of science publishing! Discover how Curvenote enhances interactivity, computation, & reproducibility in scientific work, collaborating with organizations like AGU, MSA, & Physiome. Be part of open science's evolution!

To register for Dr. Cockett's seminar, please visit https://forms.gle/eiCLQ7azirafYNbA7.

You can also visit the CRBM Seminars page to register for other upcoming speakers in the series.

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The virtual begins on Monday! Check out the website for more details:

https://reproduciblebiomodels.org/dissemination-education/2024-cell-modeling-online-summer-school-and-hackathon/



Organized by the Center for Reproducible Biomedical Modeling at the University of Washington Department of Bioengineering.