SoftSimu
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Our research is geared toward the interface between physical chemistry, condensed matter physics, biology and biomedical sciences. Typically, we employ large scale computer simulations combined with analytical studies. Most of our projects are done in collaboration with experimental groups. Currently, we concentrate on problems related to multiscale modeling of biological systems, proteins, lipid membranes, pattern formation, and computational methods.
Just accepted for publication in PCCP: "Cellulose nanofibril phosphorylation: Surface structure and monovalent ions are crucial for optimizing calcium content". With Natalia Lukasheva and Dmitry Tolmachev.
Just submitted: Morphology of Proliferating Epithelial Cellular Tissue". With Jan Åström, Bjoern Baumeier and Pranav Madhikar. Computer simulations of mechanical aspects of cell division of tumor cell interacting with healthy ones. Preprint at:
[1811.07573] Morphology of Proliferating Epithelial Cellular Tissue If you have a disability and are having trouble accessing information on this website or need materials in an alternate format, contact [email protected] for assistance.
It's been a while since the last post so here's a quick update from the last couple of months:
Published:
- Does Alpha-tocopherol flip-flop help to protect membranes against oxidation. With Jirasak Wong-Ekkabut and Phansiri Boonnoy. J. Phys. Chem. B. Web: https://doi.org/10.1021/acs.jpcb.8b09064
- CellSim3D: GPU accelerated software for simulations of cellular growth and division in three dimensions. WIth Pranav Madhikar, Bjoern Baumeier and Jan Åström. Comput. Phys. Comm. Web: https://doi.org/10.1016/j.cpc.2018.05.024
- Phospholipid-Cellulose Interactions: Insight from Atomistic Computer Simulations for Understanding the Impact of Cellulose-Based Materials on Plasma Membranes. With Andrey A. Gurtovenko, Evgenii I. Mukhamadiarov and Andrei Yu. Kostritskii,. J. Phys. Chem B. Web: https://dx.doi.org/10.1021/acs.jpcb.8b07765
- Thermoplasmonic response of semiconductor nanoparticles: A comparison with metals. With Vaibhav Thakore, Janika Tang, Kevin Conley and Tapio Ala-Nissilä. Adv. Theory Sim. Web: https://doi.org/10.1002/adts.201800100
09/28/2018
Ph.D. position in the group of Dr. Samuli Ollila in University of Helsinki for a student who is motivated to develop and apply novel biophysical methods to study structure, dynamics, and function of disordered biomolecules. The candidate is expected to have a degree (M.Sc.) in physics, chemistry, material science, computer science, life-science or related field.
Details:
https://www.helsinki.fi/en/researchgroups/biophysical-chemistry/open-positions
Open positions | University of Helsinki Open positions of Samuli Ollila group
Just accepted in Computer Physics Communications: "CellSim3D: GPU Accelerated Software for Simulations of Cellular Growth and Division in Three Dimensions." The code can simulate both diving cells and soft (non-dividing) elastic colloids in 3D. With Pranav Madhikar, Jan Åström and Jan Westerholm. Movie: https://www.flickr.com/photos/softsimu/20821026811/in/dateposted/
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Contact the school
Address
1151 Richmond Street
London, ON
